2009

• Para, A., M. Krischke, S. Merlot, Z. Shen, M. Oberholzer, S. Lee, S. Briggs and R. A. Firtel (2009). "Dictyostelium Dock180-related RacGEFs regulate the actin cytoskeleton during cell motility." Molecular biology of the cell 20(2): 699-707.        

• Bellafiore, S., Z. Shen, M.-N. Rosso, P. Abad, P. Shih and S. P. Briggs (2008). "Direct identification of the Meloidogyne incognita secretome reveals proteins with host cell reprogramming potential." PLoS pathogens 4(10): e1000192.  
• Bischof, L. J., C.-Y. Kao, F. C. O. Los, M. R. Gonzalez, Z. Shen, S. P. Briggs, F. G. van der Goot and R. V. Aroian (2008). "Activation of the unfolded protein response is required for defenses against bacterial pore-forming toxin in vivo." PLoS pathogens 4(10): e1000176.
• Castellana, N. E., S. H. Payne, Z. Shen, M. Stanke, V. Bafna and S. P. Briggs (2008). "Discovery and revision of Arabidopsis genes by proteogenomics." Proceedings of the National Academy of Sciences of the United States of America 105(52): 21034-8.
• Du, F., K. Edwards, Z. Shen, B. Sun, A. De Lozanne, S. Briggs and R. A. Firtel (2008). "Regulation of contractile vacuole formation and activity in Dictyostelium." The EMBO journal 27(15): 2064-76.
• A. M. Frank, N. Bandeira, Z. Shen, S. Tanner, S. P. Briggs, R. D. Smith and P. A. Pevzner, “Clustering millions of tandem mass spectra”, Journal of proteome research, 2008, 7 (1), 113-122
• S. Tanner, S. H. Payne, S. Dasari, Z. Shen, P. A. Wilmarth, L. L. David, W. F. Loomis, S. P. Briggs and V. Bafna, “Accurate annotation of peptide modifications through unrestrictive database search”, Journal of proteome research, 2008, 7 (1), 170-181

• S. Tanner, Z. Shen, J. Ng, L. Florea, R. Guigo, S. P. Briggs and V. Bafna, “Improving gene annotation using peptide mass spectrometry”, Genome research, 2007, 17(2), 231-239

• A. V. Orjalo, A. Arnaoutov, Z. Shen, Y. Boyarchuk, S. G. Zeitlin, B. Fontoura, S. Briggs, M. Dasso and D. J. Forbes, “The Nup107-160 nucleoporin complex is required for correct bipolar spindle assembly”, Molecular biology of the cell, 2006, 17(9), 3806-3818
• Shen Z., Wang M.W., Briggs S.P., “Use of high-throughput LC–MS/MS proteomics technologies in drug discovery”, Drug Discovery Today: Technologies, Volume 3, Issue 3, Autumn 2006, 301-306
• Beth A. Rasala, Arturo V. Orjalo, Zhouxin Shen, Steven Briggs, and Douglass J. Forbes, “ELYS is a Dual Nucleoporin/Kinetochore Protein Required for Pore Assembly and Proper Cell Division”, PNAS, 2006, 103(47): 17801-1780

• Briggs SP and T Singer. (2005). Genetic networks. Plant Physiol Jun;138(2):542-4.
• Guimil S, et al. (2005). Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization. Proc Natl Acad Sci U S A. 102:8066-7

• Tachikawa K, Schroder O, Frey G, Briggs SP, Sera T. (2004). Regulation of the endogenous VEGF-A gene by exogenous designed regulatory proteins. Proc Natl Acad Sci USA; 101:15225-30.

2003

• Multani DS, Briggs SP, Chamberlin MA, Blakeslee JJ, Murphy AS, Johal GS. (2003). Loss of an MDR transporter in compact stalks of maize br2 and sorghum dw3 mutants. Science; 302:81-4.